Acta Chimica Sinica ›› 2009, Vol. 67 ›› Issue (14): 1597-1602. Previous Articles     Next Articles

Original Articles

恢复蛋白EF-hand与钙离子去耦合作用的拉伸分子动力学模拟

李吉来a,b 耿彩云b 步宇翔a 张 亮a 张来斌a
黄旭日*,b 孙家锺b

  

  1. (a山东大学化学与化工学院 胶体与界面化学教育部重点实验室 济南 250100)
    (b吉林大学理论化学研究所 理论化学计算国家重点实验室 长春 130023)

  • 投稿日期:2008-04-21 修回日期:2008-02-28 发布日期:2009-07-28
  • 通讯作者: 黄旭日

Decoupling Interactions between EF-hands of Recoverin and Ca2+: Steered Molecular Dynamics Simulation

Li, Jilaia,b Geng, Caiyunb Bu, Yuxianga Zhang, Lianga Zhang, Laibina
Huang, Xuri*,b Sun, Chiachungb
  

  1. (a Key Laboratory of Education Ministry on Colloid and Interface Chemistry, Shandong University, Jinan 250100)
    (b State Key Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University,
    Changchun 130023)
  • Received:2008-04-21 Revised:2008-02-28 Published:2009-07-28
  • Contact: Huang, Xuri

Recoverin is an important branch of neuronal calcium sensor. To clarify the coupling/decoupling interaction mechanism between EF-hands and Ca2+, a series of constant force pulling and constant velocity pulling non-equilibrium molecular dynamics simulations were performed by using a steered molecular dynamics method. The results show that, among the residues in the EF-2 and EF-3 loop motifs, the orders of chelation abilities are Asn-76<Thr-80<Glu-85<Asp-74<Asp-78 and Thr-116<Glu-121<Asp-110<Asn-114<Asp-112, respectively. The coupling interaction between EF-3 and Ca2+ is more powerful than that between EF-2 and Ca2+. The residues of Asp-78 and Asp-112 in the EF-hand loops play vital roles in the conformational transition involving signal transduction. According to the theoretical simulation and experimental results, it is safe to make the conclusion that the Ca2+-recoverin allostery is a two-step process. In the cell signal process of Ca2+ coupling with recoverin, the interaction of Ca2+ with EF-3 triggers the conformational transition of recoverin, whereas it is carried over by Ca2+ interacting with EF-2, which makes the transition completely.

Key words: recoverin, conformational transition, signal transduction, decoupling interaction, steered molecular dynamics, Ca2+/myristoyl switch