Acta Chimica Sinica ›› 2006, Vol. 64 ›› Issue (5): 415-422. Previous Articles     Next Articles

Original Articles

基于启发式方法和支持向量机方法预测药物与人血浆蛋白结合率

司宏宗1,2,姚小军1,刘焕香1,王杰1
李加忠1,胡之德*,1,刘满仓1   

  1. (1兰州大学化学化工学院 兰州 730000)
    (2甘肃省疾病预防控制中心 兰州 730020)
  • 投稿日期:2005-07-19 修回日期:2005-11-04 发布日期:2006-03-15
  • 通讯作者: 胡之德

Prediction of Binding Rate of Drug to Human Plasma Protein Based on Heuristic Method and Support Vector Machine

SI Hong-Zong1,2, YAO Xiao-Jun1, LIU Huan-Xiang1, WANG Jie1, LI Jia-Zhong1, HU Zhi-De*,1, LIU Man-Cang1   

  1. (1 Department of Chemistry, Lanzhou University, Lanzhou 730000)
    (2 Center for Disease Control of Gansu Province, Lanzhou 730020)
  • Received:2005-07-19 Revised:2005-11-04 Published:2006-03-15
  • Contact: HU Zhi-De

The binding rate to human plasma protein for 70 diverse drugs was modeled using the descriptors calculated from the molecular structure along with a quantitative structure-activity relationship (QSAR) technique. The heuristic method (HM) and support vector machine (SVM) were utilized to construct the linear and nonlinear prediction models, leading to a good cross-validation correlation coefficient Rcv2 of 0.80 and 0.82, respectively. By comparison the stability with prediction ability of the models, it was found that support vector machine was a good method for predicting the binding rate of drug to human plasma protein.

Key words: quantitative structure-activity relationship, binding rate to human plasma protein, support vector machine, heuristic method