Acta Chimica Sinica ›› 2010, Vol. 68 ›› Issue (08): 753-759. Previous Articles     Next Articles

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鸟嘌呤四链体中K移动路径的预测

王华荣,刘翠,杨忠志*   

  1. (辽宁师范大学化学化工学院 大连 116029)
  • 投稿日期:2009-09-11 修回日期:2009-11-24 发布日期:2009-12-28
  • 通讯作者: 杨忠志 E-mail:zzyang@lnnu.edu.cn
  • 基金资助:

    国家自然科学基金

Prediction of the Exchanging Route of K in Guanine-Quadruplex

WANG Hua-Rong, LIU Cui, YANG Zhong-Zhi   

  1. (Chemistry and Chemical Engineering Faculty, Liaoning Normal University, Dalian 116029)
  • Received:2009-09-11 Revised:2009-11-24 Published:2009-12-28

Considering the configuration characteristic, this paper takes K and one g-tetrad (g-tetrad-K) as studied object, together with K and two g-tetrads (1,2-g-tetrads-K and 2,3-g-tetrads-K) in guanine-quadruplex structure (G4) as studied object. We have designed several moving routes for K in g-tetrad-K, 1,2-g-tetrads-K and 2,3-g-tetrads-K three systems to explore the interaction between g-tetrad and K. First, ab initio [MP2/6-31G(d,p)] and ABEEMσπ/MM (Atom Bond Electronegativity Equalization Method at σπ level fused into Molecular Mechanics) methods have been used to investigate the changes of structure and energy, when K moves in g-tetrad-K. The results indicate that ABEEMσπ/MM can accurately describe the properties of the g-tetrad-K system structure and energy. To approaching the practical system, ABEEMσπ/MM has been used to explore the bigger system K and two g-tetrads, which is too big to calculate the interaction energy using MP2. The changes of the interaction energy from ABEEMσπ/MM, when K moves in g-tetrad-K, 1,2-g-tetrads-K and 2,3-g-tetrads-K systems indicate that if absorb enough energy, it is easiest for the K in G4 moves out of the cavity along the α direction.

Key words: guanine-tetrad, potassium ion, ab initio, ABEEMσπ/MM

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