Acta Chimica Sinica ›› 2010, Vol. 68 ›› Issue (14): 1370-1378. Previous Articles     Next Articles

Special Topic

神经氨酸酶与3-(3-戊氧基)安息香酸作用机制的理论研究

杨志伟1,祖元刚*,1,吴晓敏1,刘成卜*,2,杨刚*,1,2   

  1. (1东北林业大学森林植物生态学教育部重点实验室 哈尔滨 150040)
    (2山东大学理论化学研究所 济南 250100)
  • 投稿日期:2009-08-31 修回日期:2010-03-02 发布日期:2010-03-16
  • 通讯作者: 杨刚 E-mail:theobiochem@gmail.com
  • 基金资助:

    国家“十一五”科技支撑计划(No. 2006BAD18B04);东北林业大学引进人才基金(No. 220-602042)

A Computational Investigation on the Interaction Mechanisms of Neuraminidases and 3-(3-Pentyloxy)benzoic Acid

Yang Zhiwei1 Zu Yuangang*,1 Wu Xiaomin1 Liu Chengbu*,2 Yang Gang*,1,2   

  1. (1 Key Laboratory of Forest Plant Ecology, Ministry of Education, Northeast Forestry University, Harbin 150040)
    (2 Institute of Theoretical Chemistry, Shandong University, Jinan 250100)
  • Received:2009-08-31 Revised:2010-03-02 Published:2010-03-16

With the aid of flexible docking and molecular dynamics methods, an in-depth investigation is carried out on the binding mechanisms of 4-(N-acetylamino)-5-guanidino-3-(3-pentyloxy)benzoic acid (BA) with various types of neuraminidases (N1, N2 and N9 subtypes and B type). It indicates that BA is docked to the various types of neuraminidases with similar mechanisms, albeit some differences exist in the binding poses. BA matches their active sites well and forms stable complexes. The largest binding affinities with N1, N2 and N9 subtypes and B type are calculated to be -1233.62, -1385.72, -663.11 and -1058.87 kJ•mol-1, respectively. It suggests that BA has excellent inhibiting effects to all the studied neuraminidases. The further analyses reveal that strong electrostatic and H-bonding interactions exist between BA and the conserved key active-site residues instead of the facile-mutated ones, indicating that the inhibiting effects will not be influenced obviously by mutations. Accordingly, BA is a potential anti-influenza virus drug worthy of more attention. Combined with the previous studies, we point out how to modify the BA molecule in order to enhance the inhibiting effects to the neuraminidases.

Key words: influenza, neuraminidase, benzoic-acid derivatives, molecular docking, drug design