share
Acta Chimica Sinica ›› 2010, Vol. 68 ›› Issue (08): 753-759. Previous Articles Next Articles
Full Papers
王华荣,刘翠,杨忠志*
投稿日期:
修回日期:
发布日期:
通讯作者:
基金资助:
国家自然科学基金
WANG Hua-Rong, LIU Cui, YANG Zhong-Zhi
Received:
Revised:
Published:
Share
Considering the configuration characteristic, this paper takes K+ and one g-tetrad (g-tetrad-K+) as studied object, together with K+ and two g-tetrads (1,2-g-tetrads-K+ and 2,3-g-tetrads-K+) in guanine-quadruplex structure (G4) as studied object. We have designed several moving routes for K+ in g-tetrad-K+, 1,2-g-tetrads-K+ and 2,3-g-tetrads-K+ three systems to explore the interaction between g-tetrad and K+. First, ab initio [MP2/6-31G(d,p)] and ABEEMσπ/MM (Atom Bond Electronegativity Equalization Method at σπ level fused into Molecular Mechanics) methods have been used to investigate the changes of structure and energy, when K+ moves in g-tetrad-K+. The results indicate that ABEEMσπ/MM can accurately describe the properties of the g-tetrad-K+ system structure and energy. To approaching the practical system, ABEEMσπ/MM has been used to explore the bigger system K+ and two g-tetrads, which is too big to calculate the interaction energy using MP2. The changes of the interaction energy from ABEEMσπ/MM, when K+ moves in g-tetrad-K+, 1,2-g-tetrads-K+ and 2,3-g-tetrads-K+ systems indicate that if absorb enough energy, it is easiest for the K+ in G4 moves out of the cavity along the α direction.
Key words: guanine-tetrad, potassium ion, ab initio, ABEEMσπ/MM
CLC Number:
O641
WANG Hua-Rong, LIU Cui, YANG Zhong-Zhi. Prediction of the Exchanging Route of K+ in Guanine-Quadruplex[J]. Acta Chimica Sinica, 2010, 68(08): 753-759.
Export EndNote|Reference Manager|ProCite|BibTeX|RefWorks