Chinese Journal of Organic Chemistry >
Synthesis and Herbicidal Activity of Di-substituted Pyrimidine-Biphenyls and Study of Molecular Mode of Action
Received date: 2024-05-25
Revised date: 2024-06-25
Online published: 2024-07-25
Supported by
National Natural Science Foundation of China(31471807)
Starting from the pyrimidine-biphenyl compound 1 as a lead structure, a series of di-substituted pyrimidine-biphenyl compounds were designed and synthesized by introducing disubstituents to its δ-ring. All the target compounds were characterized by 1H NMR, 13C NMR, 19F NMR, and HRMS. The results of herbicidal activity evaluation in the greenhouse assay showed that most of the compounds exhibited excellent herbicidal activity against Echinochloa crusgalli, Digitaria san- guinalis, and Amaranthus retroflexus in post-emergence treatments. Notably, N-(2-((4,6-dimethoxypyrimidin-2-yl)oxy)-benzyl)-3'-methoxy-5'-methyl-[1,1'-biphenyl]-2-amine (4f) demonstrated an average pre- and post-emergence weed control of 81% against four tested weeds, exhibiting broad-spectrum herbicidal activities. The study of molecular mode of action revealed that the target compound 4f was acetohydroxyacid synthase (AHAS). 4f established extensive hydrophobic interactions with the residues within the hydrophobic cavity of AHAS, particularly enhancing the interactions with residues M352, V485, and the cofactor flavin adenine dinucleotide (FAD). Consequently, 4f (IC50=98.1 μmol/L) exhibited higher AHAS inhibitory activity compared to the lead structure 1 (IC50=157μmol/L). These findings suggested that 4f was worthy of further investigation.
Yitao Yan , Yinglu Chen , Hanxian Hu , Jun Wu . Synthesis and Herbicidal Activity of Di-substituted Pyrimidine-Biphenyls and Study of Molecular Mode of Action[J]. Chinese Journal of Organic Chemistry, 2025 , 45(1) : 358 -366 . DOI: 10.6023/cjoc202405035
| [1] | Liu, Y.; Li, Y.; Wang, X. Appl. Microbiol. Biotechnol. 2016, 100, 8633. |
| [2] | Garcia, M. D.; Nouwens, A.; Lonhienne, T. G.; Guddat, L. W. Proc. Natl. Acad. Sci. U. S. A. 2017, 114, E1091. |
| [3] | (a) Chen, C.-N.; Chen, Q.; Liu, Y.-C.; Zhu, X.-L.; Niu, C.-W.; Xi, Z.; Yang, G.-F. Bioorg. Med. Chem. 2010, 18, 4897. |
| [3] | (b) Liu, Y.-C.; Qu, R.-Y.; Chen, Q.; Yang, J.-F.; Niu, C.-W.; Xi, Z.; Yang, G.-F. J. Agric. Food Chem. 2016, 64, 4845. |
| [3] | (c) Qu, R.-Y.; Yang, J.-F.; Devendar, P.; Kang, W.-M.; Liu, Y.-C.; Chen, Q.; Niu, C.-W.; Xi, Z.; Yang, G.-F. J. Agric. Food Chem. 2017, 65, 11170. |
| [3] | (d) Li, K.-J.; Qu, R.-Y.; Liu, Y.-C.; Yang, J.-F.; Devendar, P.; Chen, Q.; Niu, C.-W.; Xi, Z.; Yang, G.-F. J. Agric. Food Chem. 2018, 66, 3773. |
| [3] | (e) Lv, X.-H.; Ren, Z.-L.; Liu, H.; Li, H.-d.; Li, Q.-S.; Wang, L.; Zhang, L.-S.; Yao, X.-K.; Cao, H.-Q. Chem. Pharm. Bull. 2018, 66, 358. |
| [3] | (f) Qu, R.; Yan, Y.; Yang, J.; Chen, Q.; Yang, G. Chin. J. Org. Chem. 2019, 39, 2303 (in Chinese). |
| [3] | (曲仁渝, 严耀超, 杨景芳, 陈琼, 杨光富, 有机化学, 2019, 39, 2303.) |
| [3] | (g) Qu, R.; Cai, Z.; Yang, J.; Liu, Y.; Chen, Q.; Niu, C.; Xi, Z.; Yang, G. Chin. J. Org. Chem. 2020, 40, 3953 (in Chinese). |
| [3] | (曲仁渝, 蔡卓梅, 杨景芳, 刘玉超, 陈琼, 牛聪伟, 席真, 杨光富, 有机化学, 2020, 40, 3953.) |
| [3] | (h) Kalnmals, C. A.; Benko, Z. L.; Hamza, A.; Bravo-Altamirano, K.; Siddall, T. L.; Zielinski, M.; Takano, H. K.; Riar, D. S.; Satchivi, N. M.; Roth, J. J.; Church, J. B. J. Agric. Food Chem. 2023, 71, 18171. |
| [3] | (i) Takano, H. K.; Benko, Z. L.; Zielinski, M. M.; Hamza, A.; Kalnmals, C. A.; Roth, J. J.; Bravo-Altamirano, K.; Siddall, T.; Satchivi, N.; Church, J. B. J. Agric. Food Chem. 2023, 71, 18227. |
| [4] | Davis, A. M.; Teague, S. J. Angew. Chem., Int. Ed. 1999, 38, 736. |
| [5] | Yan, Y.; Chen, Y.; Hu, H.; Jiang, Y.; Kang, Z.; Wu, J. Molecules 2024, 29, 2409. |
| [6] | (a) Xu, P.; Duan, X. Chin. J. Org. Chem. 2019, 39, 3315 (in Chinese). |
| [6] | (徐鹏, 段新红, 有机化学, 2019, 39, 3315.) |
| [6] | (b) Hooshmand, S. E.; Heidari, B.; Sedghi, R.; Varma, R. S. Green Chem. 2019, 21, 381. |
| [7] | (a) Kempton, R. J.; Kidd-Kautz, T. A.; Laurenceau, S.; Paula, S. Beilstein J. Org. Chem. 2019, 15, 971. |
| [7] | (b) Zaman, G.; Ullah, S.; Uzair, M.; Batool, S.; Ahmad, H.; Ullah, F.; Pelletier, J.; Sévigny, J.; Iqbal, J.; Hassan, A. ChemMedChem 2023, 18, e202300165. |
| [8] | Meng, J.-P.; Wang, W.-W.; Chen, Y.-L.; Bera, S.; Wu, J. Org. Chem. Front. 2020, 7, 267. |
| [9] | Ma, D.; Yin, Y.; Chen, Y.-L.; Yan, Y.-T.; Wu, J. RSC Adv. 2021, 11, 15380. |
| [10] | Morris, G. M.; Huey, R.; Lindstrom, W.; Sanner, M. F.; Belew, R. K.; Goodsell, D. S.; Olson, A. J. J. Comput. Chem. 2009, 30, 2785. |
| [11] | Chang, A. K.; Duggleby, R. G. Biochem. J. 1997, 327, 161. |
| [12] | Fan, Z.-J.; Chen, J.-P.; Hu, J.-Y.; Qian, C.-F.; Li, Z.-M. Agric. Sci. China 2003, 2, 176. |
| [13] | Min, J.; Zhang, X.; Wang, L.; Zou, X.; Zhang, Q.; He, J. J. Mol. Catal. B: Enzym. 2011, 68, 174. |
/
| 〈 |
|
〉 |