Chinese Journal of Organic Chemistry    

NOTE

双取代嘧啶-联苯化合物的合成及除草活性和分子作用机制研究

颜逸韬a, 陈颖露a, 胡涵显b, 吴军a,*   

  1. a浙江大学化学系 杭州 310058;
    b浙江大学物理学院 杭州 310027
  • 收稿日期:2024-05-25 修回日期:2024-06-25
  • 基金资助:
    国家自然科学基金(No. 31471807)资助项目.

Synthesis and Herbicidal Activity of Di-substituted Pyrimidine- Biphenyls and Study of Molecular Mode of Action

Yitao Yana, Yinglu Chena, Hanxian Hub, Jun Wua,*   

  1. aDepartment of Chemistry, Zhejiang University, Hangzhou 310058;
    bSchool of Physics, Zhejiang University, Hangzhou 310027
  • Received:2024-05-25 Revised:2024-06-25
  • Contact: *E-mail: wujunwu@zju.edu.cn
  • Supported by:
    National Natural Science Foundation of China (No. 31471807)

Starting from the pyrimidine-biphenyl compound 1 as a lead structure, a series of di-substituted pyrimidine -biphenyl compounds were designed and synthesized by introducing disubstituents to its δ-ring. All the target compounds were characterized by 1H NMR, 13C NMR, 19F NMR, and HRMS. The results of herbicidal activity evaluation in the greenhouse assay showed that most of the compounds exhibited excellent herbicidal activity against Echinochloa crusgalli, Digitaria san- guinalis, and Amaranthus retroflexus in post-emergence treatments. Notably, N-(2-((4,6-dimethoxypyrimidin-2-yl)oxy)benzyl) -3'-methoxy-5'-methyl-[1,1'-biphenyl]-2-amine (4f) demonstrated an average pre- and post-emergence weed control of 81% against four tested weeds, exhibiting broad-spectrum herbicidal activities. The study of molecular mode of action revealed that the target of 4f was acetohydroxyacid synthase (AHAS). 4f established extensive hydrophobic interactions with the residues within the hydrophobic cavity of AHAS, particularly enhancing the interactions with residues M352, V485, and the cofactor FAD. Consequently, 4f (IC50 = 98.1 μM) exhibited higher AHAS inhibitory activity compared to the lead structure 1 (IC50 = 157 μM). These findings suggested that 4f was worthy of further investigation.

Key words: acetohydroxyacid synthase inhibitor, biphenyl, Suzuki cross coupling, herbicidal activity, molecular docking