Chinese Journal of Organic Chemistry ›› 2023, Vol. 43 ›› Issue (2): 734-741.DOI: 10.6023/cjoc202207021 Previous Articles Next Articles
收稿日期:
2022-07-11
修回日期:
2022-08-28
发布日期:
2022-09-23
基金资助:
Received:
2022-07-11
Revised:
2022-08-28
Published:
2022-09-23
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Xuqin Zhong, Zhen Liu. Conformational Screening of the Catalyst System Containing Transition Metal and Flexible Ligand[J]. Chinese Journal of Organic Chemistry, 2023, 43(2): 734-741.
Entry | Molecular dynamics | GFN0-xTB | DFT calculation | ||||||
---|---|---|---|---|---|---|---|---|---|
Fixed atom | Steps | Temperature/K | Initial conformer ensemble | Refined conformer ensemble | Final conformer ensemble | Energy window/ (kJ•mol-1) | |||
1 | 1,2 | 100000000 | 473 | 10000 | 1453 | 11 | 59.1 | ||
2 | 1,2 | 100000000 | 573 | 10000 | 2125 | 13 | 37.6 | ||
3 | 1,2 | 100000000 | 673 | 10000 | 2901 | 6 | 16.0 |
Entry | Molecular dynamics | GFN0-xTB | DFT calculation | ||||||
---|---|---|---|---|---|---|---|---|---|
Fixed atom | Steps | Temperature/K | Initial conformer ensemble | Refined conformer ensemble | Final conformer ensemble | Energy window/ (kJ•mol-1) | |||
1 | 1,2 | 100000000 | 473 | 10000 | 1453 | 11 | 59.1 | ||
2 | 1,2 | 100000000 | 573 | 10000 | 2125 | 13 | 37.6 | ||
3 | 1,2 | 100000000 | 673 | 10000 | 2901 | 6 | 16.0 |
Number of conformers | Free energy/Hartree | Moments of inertia/(amu•Å2) | Bond length/nm | ||||||
---|---|---|---|---|---|---|---|---|---|
Ix | Iy | Iz | β-H-Cr | γ-H-Cr | δ-H-Cr | β'-H-Cr | |||
T-TS1-01 | -2278.749756 | 4352 | 5753 | 7316 | 0.191 | 0.403 | 0.370 | 0.408 | |
T-TS1-02 | -2278.749149 | 4370 | 5802 | 7342 | 0.191 | 0.405 | 0.371 | 0.409 | |
T-TS1-03 | -2278.748547 | 4343 | 5903 | 7374 | 0.192 | 0.426 | 0.470 | 0.335 | |
T-TS1-04 | -2278.748273 | 4335 | 6034 | 7546 | 0.202 | 0.433 | 0.472 | 0.336 | |
T-TS1-05 | -2278.748137 | 4313 | 5945 | 7473 | 0.194 | 0.427 | 0.471 | 0.334 | |
T-TS1-06 | -2278.746676 | 4332 | 6022 | 7578 | 0.201 | 0.433 | 0.473 | 0.335 | |
T-TS1-07 | -2278.743619 | 4482 | 5545 | 7000 | 0.190 | 0.427 | 0.458 | 0.408 | |
T-TS1-08 | -2278.743565 | 4250 | 5962 | 7446 | 0.274 | 0.457 | 0.329 | 0.406 | |
T-TS1-09 | -2278.743516 | 4153 | 5952 | 7590 | 0.193 | 0.376 | 0.369 | 0.351 | |
T-TS1-10 | -2278.740752 | 4245 | 6005 | 7155 | 0.421 | 0.378 | 0.402 | 0.189 | |
T-TS1-11 | -2278.740313 | 4112 | 6761 | 8227 | 0.423 | 0.508 | 0.484 | 0.335 | |
T-TS1-12 | -2278.739514 | 4240 | 6048 | 7161 | 0.420 | 0.380 | 0.401 | 0.189 | |
T-TS1-13 | -2278.739294 | 4458 | 5460 | 6831 | 0.303 | 0.209 | 0.421 | 0.321 | |
T-TS1-14 | -2278.738767 | 4513 | 5428 | 6810 | 0.300 | 0.208 | 0.424 | 0.338 | |
T-TS1-15 | -2278.738175 | 4181 | 5995 | 7251 | 0.407 | 0.463 | 0.431 | 0.191 | |
T-TS1-16 | -2278.738063 | 4190 | 6023 | 7261 | 0.406 | 0.461 | 0.429 | 0.190 | |
T-TS1-17 | -2278.732524 | 4298 | 5554 | 6822 | 0.339 | 0.425 | 0.206 | 0.335 |
Number of conformers | Free energy/Hartree | Moments of inertia/(amu•Å2) | Bond length/nm | ||||||
---|---|---|---|---|---|---|---|---|---|
Ix | Iy | Iz | β-H-Cr | γ-H-Cr | δ-H-Cr | β'-H-Cr | |||
T-TS1-01 | -2278.749756 | 4352 | 5753 | 7316 | 0.191 | 0.403 | 0.370 | 0.408 | |
T-TS1-02 | -2278.749149 | 4370 | 5802 | 7342 | 0.191 | 0.405 | 0.371 | 0.409 | |
T-TS1-03 | -2278.748547 | 4343 | 5903 | 7374 | 0.192 | 0.426 | 0.470 | 0.335 | |
T-TS1-04 | -2278.748273 | 4335 | 6034 | 7546 | 0.202 | 0.433 | 0.472 | 0.336 | |
T-TS1-05 | -2278.748137 | 4313 | 5945 | 7473 | 0.194 | 0.427 | 0.471 | 0.334 | |
T-TS1-06 | -2278.746676 | 4332 | 6022 | 7578 | 0.201 | 0.433 | 0.473 | 0.335 | |
T-TS1-07 | -2278.743619 | 4482 | 5545 | 7000 | 0.190 | 0.427 | 0.458 | 0.408 | |
T-TS1-08 | -2278.743565 | 4250 | 5962 | 7446 | 0.274 | 0.457 | 0.329 | 0.406 | |
T-TS1-09 | -2278.743516 | 4153 | 5952 | 7590 | 0.193 | 0.376 | 0.369 | 0.351 | |
T-TS1-10 | -2278.740752 | 4245 | 6005 | 7155 | 0.421 | 0.378 | 0.402 | 0.189 | |
T-TS1-11 | -2278.740313 | 4112 | 6761 | 8227 | 0.423 | 0.508 | 0.484 | 0.335 | |
T-TS1-12 | -2278.739514 | 4240 | 6048 | 7161 | 0.420 | 0.380 | 0.401 | 0.189 | |
T-TS1-13 | -2278.739294 | 4458 | 5460 | 6831 | 0.303 | 0.209 | 0.421 | 0.321 | |
T-TS1-14 | -2278.738767 | 4513 | 5428 | 6810 | 0.300 | 0.208 | 0.424 | 0.338 | |
T-TS1-15 | -2278.738175 | 4181 | 5995 | 7251 | 0.407 | 0.463 | 0.431 | 0.191 | |
T-TS1-16 | -2278.738063 | 4190 | 6023 | 7261 | 0.406 | 0.461 | 0.429 | 0.190 | |
T-TS1-17 | -2278.732524 | 4298 | 5554 | 6822 | 0.339 | 0.425 | 0.206 | 0.335 |
Number of conformers | Free energy/Hartree | Moments of inertia/(amu•Å2) | Bond length/nm | ||||
---|---|---|---|---|---|---|---|
Ix | Iy | Iz | β-H-Cr | γ-H-Cr | |||
C-TS1-01 | -2278.749758 | 4352 | 5752 | 7315 | 0.191 | 0.403 | |
C-TS1-02 | -2278.749144 | 4370 | 5801 | 7342 | 0.191 | 0.405 | |
C-TS1-03 | -2278.748529 | 4343 | 5902 | 7373 | 0.192 | 0.426 | |
C-TS1-04 | -2278.748141 | 4313 | 5945 | 7473 | 0.194 | 0.427 | |
C-TS1-05 | -2278.744931 | 4436 | 5661 | 7292 | 0.197 | 0.430 | |
C-TS1-06 | -2278.744013 | 4479 | 5705 | 7226 | 0.198 | 0.431 | |
C-TS1-07 | -2278.743616 | 4482 | 5545 | 7000 | 0.190 | 0.427 | |
C-TS1-08 | -2278.743562 | 4533 | 5670 | 7164 | 0.199 | 0.433 | |
C-TS1-09 | -2278.743497 | 4153 | 5952 | 7590 | 0.193 | 0.376 | |
C-TS1-10 | -2278.743444 | 4457 | 5597 | 7154 | 0.191 | 0.428 | |
C-TS1-11 | -2278.742194 | 4166 | 5960 | 7603 | 0.192 | 0.377 | |
C-TS1-12 | -2278.741632 | 4476 | 5699 | 7288 | 0.200 | 0.433 | |
C-TS1-13 | -2278.739285 | 4458 | 5461 | 6831 | 0.303 | 0.209 | |
C-TS1-14 | -2278.73923 | 4616 | 5288 | 6739 | 0.298 | 0.219 | |
C-TS1-15 | -2278.735569 | 4424 | 5988 | 6845 | 0.199 | 0.414 | |
C-TS1-16 | -2278.734971 | 4444 | 6051 | 6819 | 0.199 | 0.413 |
Number of conformers | Free energy/Hartree | Moments of inertia/(amu•Å2) | Bond length/nm | ||||
---|---|---|---|---|---|---|---|
Ix | Iy | Iz | β-H-Cr | γ-H-Cr | |||
C-TS1-01 | -2278.749758 | 4352 | 5752 | 7315 | 0.191 | 0.403 | |
C-TS1-02 | -2278.749144 | 4370 | 5801 | 7342 | 0.191 | 0.405 | |
C-TS1-03 | -2278.748529 | 4343 | 5902 | 7373 | 0.192 | 0.426 | |
C-TS1-04 | -2278.748141 | 4313 | 5945 | 7473 | 0.194 | 0.427 | |
C-TS1-05 | -2278.744931 | 4436 | 5661 | 7292 | 0.197 | 0.430 | |
C-TS1-06 | -2278.744013 | 4479 | 5705 | 7226 | 0.198 | 0.431 | |
C-TS1-07 | -2278.743616 | 4482 | 5545 | 7000 | 0.190 | 0.427 | |
C-TS1-08 | -2278.743562 | 4533 | 5670 | 7164 | 0.199 | 0.433 | |
C-TS1-09 | -2278.743497 | 4153 | 5952 | 7590 | 0.193 | 0.376 | |
C-TS1-10 | -2278.743444 | 4457 | 5597 | 7154 | 0.191 | 0.428 | |
C-TS1-11 | -2278.742194 | 4166 | 5960 | 7603 | 0.192 | 0.377 | |
C-TS1-12 | -2278.741632 | 4476 | 5699 | 7288 | 0.200 | 0.433 | |
C-TS1-13 | -2278.739285 | 4458 | 5461 | 6831 | 0.303 | 0.209 | |
C-TS1-14 | -2278.73923 | 4616 | 5288 | 6739 | 0.298 | 0.219 | |
C-TS1-15 | -2278.735569 | 4424 | 5988 | 6845 | 0.199 | 0.414 | |
C-TS1-16 | -2278.734971 | 4444 | 6051 | 6819 | 0.199 | 0.413 |
分子 模型 | 程序 | 构象数量 | 能量窗口/ (kJ•mol-1) | 最低构象是否一致 |
---|---|---|---|---|
TS1 | Tinker | 17 | 45.2 | 是 |
6 | 12.6 | |||
CREST | 16 | 38.8 | ||
4 | 12.6 | |||
TS2 | Tinker | 6 | 17.7 | 是 |
5 | 12.6 | |||
CREST | 9 | 17.7 | ||
5 | 12.6 | |||
TS3 | Tinker | 22 | 27.4 | 是 |
8 | 12.6 | |||
CREST | 29 | 26.0 | ||
12 | 12.6 |
分子 模型 | 程序 | 构象数量 | 能量窗口/ (kJ•mol-1) | 最低构象是否一致 |
---|---|---|---|---|
TS1 | Tinker | 17 | 45.2 | 是 |
6 | 12.6 | |||
CREST | 16 | 38.8 | ||
4 | 12.6 | |||
TS2 | Tinker | 6 | 17.7 | 是 |
5 | 12.6 | |||
CREST | 9 | 17.7 | ||
5 | 12.6 | |||
TS3 | Tinker | 22 | 27.4 | 是 |
8 | 12.6 | |||
CREST | 29 | 26.0 | ||
12 | 12.6 |
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